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Can\'t run under Debian Sarge

Can\'t run under Debian Sarge

Questions and Answers : Unix/Linux : Can\'t run under Debian Sarge
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old_user8719

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Message 24413 - Posted: 25 Sep 2006, 17:09:48 UTC
Last modified: 25 Sep 2006, 17:09:17 UTC

Hi,

I get :

Mon Sep 25 17:44:41 2006|climateprediction.net|Starting task hadcm3lbm_9u6x_25228300_0 using hadcm3lb version 515

in the log, but the cpu and progress remain at 0%. Seti and Rosetta run ok.
I am running under Debian Sarge.
Any Ideas?
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Les Bayliss
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Message 24417 - Posted: 25 Sep 2006, 19:38:00 UTC

One of the problems with this project, is that if it doesn\'t get to run for long enough, it won\'t reach a checkpoint.
As you\'re running other projects as well, the cpdn model may be getting pre-empted too soon.
In which case, the only restart point is from the beginning.
Which is why it\'s necessary to set Leave applications in memory while suspended? in your General preferences to yes

If it\'s not this, please ask again.

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old_user8719

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Message 24419 - Posted: 25 Sep 2006, 20:09:12 UTC - in response to Message 24417.  

One of the problems with this project, is that if it doesn\'t get to run for long enough, it won\'t reach a checkpoint.
As you\'re running other projects as well, the cpdn model may be getting pre-empted too soon.
In which case, the only restart point is from the beginning.
Which is why it\'s necessary to set Leave applications in memory while suspended? in your General preferences to yes

If it\'s not this, please ask again.


I have it set to stay in memory. When the other projects are running, the cpu is 100%, but when CP is running it drops to near zero. The progress stays at 0.000%. I can see the process, but it doesn\'t seem to do anything. I have tried restarting, but get the same results.
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Profile astroWX
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Message 24423 - Posted: 26 Sep 2006, 3:55:13 UTC
Last modified: 26 Sep 2006, 3:54:47 UTC

From your posted message line, I presume you\'re running with the GUI. Any diagnostics under the Messages tab?

"We have met the enemy and he is us." -- Pogo
Greetings from coastal Washington state, the scenic US Pacific Northwest.
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old_user8719

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Message 24431 - Posted: 26 Sep 2006, 8:40:52 UTC - in response to Message 24423.  

From your posted message line, I presume you\'re running with the GUI. Any diagnostics under the Messages tab?



The log looks ok, I get:

Tue Sep 26 09:37:57 2006|climateprediction.net|Restarting task hadcm3lbm_9u6x_25228300_0 using hadcm3lb version 515

when it starts. It runs for its alloted time, but doesn\'t do anything.
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Profile astroWX
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Message 24443 - Posted: 28 Sep 2006, 19:43:27 UTC

Beats me, unless the CPDN Project or CPDN Task is suspended, in which case, you shouldn\'t see the \"Restarting...\" line.

Are you familiar with boinc files? Specifically: client_state.xml? If so, does anything appear obviously wrong? Missing ot trashed entries? (If not familiar, please ignore the question; it\'s not a good place to go poking around.) Given that CPDN remains at 0%, I\'m wondering whether BOINC and/or CPDN are waiting for something that isn\'t there. (Is Internet access allowed?)

If nothing else works, I\'d reset Project and re-try. If the same thing happens again, we\'ll have to call-in bigger guns, \'cuz I\'m stumped.

"We have met the enemy and he is us." -- Pogo
Greetings from coastal Washington state, the scenic US Pacific Northwest.
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Helmer Bryd

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Message 24449 - Posted: 29 Sep 2006, 0:47:27 UTC

One way to better see whats happening is to start the thing in a terminal window with ./boinc
Then run ./boincmgr in a second terminal
This gives more info than the message tab
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Message 24498 - Posted: 2 Oct 2006, 13:24:30 UTC

I started boic manually and got the following:
CHAPEL2:/etc/init.d# boinc_client -dir /var/lib/boinc-client
2006-10-02 14:20:54 [---] Starting BOINC client version 5.4.11 for i686-pc-linux-gnu
2006-10-02 14:20:54 [---] libcurl/7.13.2 OpenSSL/0.9.7e zlib/1.2.2 libidn/0.5.13
2006-10-02 14:20:54 [---] Data directory: /var/lib/boinc-client
2006-10-02 14:20:54 [---] Processor: 1 AuthenticAMD AMD Athlon(tm) XP 2500+
2006-10-02 14:20:54 [---] Memory: 504.26 MB physical, 2.22 GB virtual
2006-10-02 14:20:54 [---] Disk: 2.75 GB total, 1.85 GB free
2006-10-02 14:20:54 [SETI@home] URL: http://setiathome.berkeley.edu/; Computer ID: 2699045; location: home; project prefs: default
2006-10-02 14:20:54 [climateprediction.net] URL: http://climateprediction.net/; Computer ID: 483470; location: work; project prefs: default
2006-10-02 14:20:54 [rosetta@home] URL: http://boinc.bakerlab.org/rosetta/; Computer ID: 313885; location: home; project prefs: default
2006-10-02 14:20:54 [---] General prefs: from climateprediction.net (last modified 2006-09-25 18:22:15)
2006-10-02 14:20:54 [---] General prefs: using separate prefs for work
2006-10-02 14:20:54 [---] Reading preferences override file
2006-10-02 14:20:54 [---] Local control only allowed
2006-10-02 14:20:54 [---] Listening on port 31416
2006-10-02 14:20:54 [SETI@home] Deferring task 27se00aa.12354.27136.378392.3.137_1
2006-10-02 14:20:54 [rosetta@home] Deferring task t354__BOINC_FOLLOWUP_ABRELAX_SAVE_ALL_OUT_BARCODE_nterm_hom001__1255_141380_0
2006-10-02 14:20:54 [climateprediction.net] Resuming task hadcm3lbm_bxic_25325911_1 using hadcm3lb version 515
2006-10-02 14:20:54 [rosetta@home] Deferring task t354__BOINC_FOLLOWUP_ABRELAX_SAVE_ALL_OUT_BARCODE_nterm_hom001__1255_174515_0
2006-10-02 14:20:54 [SETI@home] Deferring task 03jn03aa.25896.6481.586096.3.27_1
2006-10-02 14:20:54 [rosetta@home] Deferring task t354__BOINC_FOLLOWUP_ABRELAX_SAVE_ALL_OUT_BARCODE_nterm_hom001__1255_176282_0
Beginning work on result hadcm3lbm_bxic_25325911_1...
Starting model in /var/lib/boinc-client/projects/climateprediction.net...
Created shared memory region key = 90710 of size 655048 bytes
.so shmem return code = 0
Starting model ID hadcm3lbm_bxic_25325911 Phase 1
Getting pthread attributes - retval=0
Setting pthread size (79691776 bytes) - retval=22
Climate model starting - use graphics to monitor progress.
Or visit the website to see the graphs for this run.


Still the cpu is zero
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Helmer Bryd

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Message 24513 - Posted: 3 Oct 2006, 9:43:41 UTC - in response to Message 24498.  


Getting pthread attributes - retval=0
Setting pthread size (79691776 bytes) - retval=22


That looks bad, it should be retval=0 on both those lines.
Sorry, don\'t know much more..
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Message 24670 - Posted: 12 Oct 2006, 8:53:15 UTC - in response to Message 24513.  


Getting pthread attributes - retval=0
Setting pthread size (79691776 bytes) - retval=22


That looks bad, it should be retval=0 on both those lines.
Sorry, don\'t know much more..


that means cpdn couldn\'t dynamically set the stack space, we require >64MB for that, usually Linux kernels accept the run-time params we set, but it could be a global O/S change you require.
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